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Survival-associated eQTLs across different cancer types


We identified 22,212 eQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "STAD"
e.g., "rs1824937"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
LIHC rs185715543 chr12:112292752 G/GT 6.38E-6 192 12.57 14.98 4.03 KM Plot
LIHC rs186582669 chr2:201842849 T/A 0 191 13.17 14.03 0.37 KM Plot
LIHC rs1877320 chr4:187131279 G/A 7.19E-8 190 3.03 13.17 13.67 KM Plot
LIHC rs1893600 chr21:44415055 A/G 5.75E-6 192 2.7 13.85 13.57 KM Plot
LIHC rs1894396 chr8:28640771 A/G 1.16E-9 192 13.53 13.38 0.63 KM Plot
LIHC rs1907488 chr4:44642453 C/T 6.05E-5 189 5.7 13.17 16.6 KM Plot
LIHC rs1907489 chr4:44657191 C/A 0.000221 191 7.43 13.7 13.85 KM Plot
LIHC rs1907490 chr4:44657196 C/T 2.36E-5 191 5.7 13.17 16.07 KM Plot
LIHC rs1917392 chr7:64423345 C/A 3.53E-7 192 2.9 5.22 13.97 KM Plot
LIHC rs192645640 chr2:201842850 A/C 0 191 13.17 14.03 0.37 KM Plot
LIHC rs1970879 chr7:64434470 T/C 4.0E-12 192 1.77 5.7 13.97 KM Plot
LIHC rs1979662 chr4:44650561 C/T 0.000158 189 6.57 13.85 13.97 KM Plot
LIHC rs1981517 chr12:112323582 A/G 2.24E-5 191 12.57 14.85 5.17 KM Plot
LIHC rs199498726 chr3:127946950 ACCT/A 0.000119 192 14.35 2.97 11.13 KM Plot
LIHC rs2001976 chr3:126438884 A/C 0.000287 190 13.73 13.87 6.08 KM Plot